CRAN Package Check Results for Maintainer ‘Rahul Satija <seurat at nygenome.org>’

Last updated on 2024-05-16 23:53:39 CEST.

Package ERROR NOTE
Seurat 3 10
SeuratObject 13

Package Seurat

Current CRAN status: ERROR: 3, NOTE: 10

Version: 5.1.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BPCells', 'presto' Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 5.1.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BPCells', 'presto' Imports includes 47 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally. Flavor: r-devel-linux-x86_64-fedora-clang

Version: 5.1.0
Check: Rd cross-references
Result: NOTE Undeclared package ‘Signac’ in Rd xrefs Flavor: r-devel-linux-x86_64-fedora-clang

Version: 5.1.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BPCells', 'monocle', 'presto' Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 5.1.0
Check: installed package size
Result: NOTE installed size is 11.2Mb sub-directories of 1Mb or more: R 2.1Mb libs 8.2Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 5.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [66s/72s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 11. │ ├─assertthat::assert_that(inherits(object, class), msg = msg) 12. │ │ └─assertthat::see_if(..., env = env, msg = msg) 13. │ │ ├─base::tryCatch(...) 14. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 15. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 16. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 17. │ │ └─base::eval(assertion, env) 18. │ │ └─base::eval(assertion, env) 19. │ └─base::inherits(object, class) 20. └─ParquetArrowReaderProperties$create() 21. └─arrow:::parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads)) [ FAIL 2 | WARN 1 | SKIP 29 | PASS 673 ] Error: Test failures Execution halted Flavor: r-release-macos-arm64

Version: 5.1.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'arrow', 'BPCells', 'monocle', 'presto' Flavor: r-release-macos-x86_64

Version: 5.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [69s/75s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 11. │ ├─assertthat::assert_that(inherits(object, class), msg = msg) 12. │ │ └─assertthat::see_if(..., env = env, msg = msg) 13. │ │ ├─base::tryCatch(...) 14. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 15. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 16. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 17. │ │ └─base::eval(assertion, env) 18. │ │ └─base::eval(assertion, env) 19. │ └─base::inherits(object, class) 20. └─ParquetArrowReaderProperties$create() 21. └─arrow:::parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads)) [ FAIL 2 | WARN 1 | SKIP 29 | PASS 673 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64

Version: 5.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [104s/199s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 11. │ ├─assertthat::assert_that(inherits(object, class), msg = msg) 12. │ │ └─assertthat::see_if(..., env = env, msg = msg) 13. │ │ ├─base::tryCatch(...) 14. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 15. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 16. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 17. │ │ └─base::eval(assertion, env) 18. │ │ └─base::eval(assertion, env) 19. │ └─base::inherits(object, class) 20. └─ParquetArrowReaderProperties$create() 21. └─arrow:::parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads)) [ FAIL 2 | WARN 1 | SKIP 29 | PASS 673 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-x86_64

Package SeuratObject

Current CRAN status: NOTE: 13

Version: 5.0.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘BPCells’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 5.0.2
Check: Rd cross-references
Result: NOTE Undeclared packages ‘plotly’, ‘cli’ in Rd xrefs Flavor: r-devel-linux-x86_64-fedora-clang

Version: 5.0.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'HDF5Array', 'BPCells' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64